SmartPeak¶
Step-by-step guides
About Smartpeak
Other
Overview¶
SmartPeak is an application that encapsulates advanced algorithms to enable fast, accurate, and automated processing of CE-, GC- and LC-MS(/MS) data, and HPLC data for targeted and semi-targeted metabolomics, lipidomics, and fluxomics experiments. The software is based on the OpenMS toolkit.
SmartPeak provides graphical- and/or command-line-based user input validation, workflow configuration, data visualization and review, logging, and reporting. SmartPeak can be run on multiple operating systems or run on cloud infrastructures. The workflow automates all steps from peak detection and integration over calibration curve optimization, to quality control reporting.
TODO¶
Todo
Describe Integrity checks options..
Todo
Explain the difference in options: Create FeatureDB.csv and Create PivotTable.csv.
Todo
Describe the functionality of the SmartPeak Server.
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Describe how to set-up the SmartPeak Server as an IT administrator.
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Describe how to connect to the SmartPeak Server as a user.
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The rest of the tutorial.
Todo
Describe Integrity checks options..
Todo
Explain the difference in options: Create FeatureDB.csv and Create PivotTable.csv.
Todo
Describe the functionality of the SmartPeak Server.
Todo
Describe how to set-up the SmartPeak Server as an IT administrator.
Todo
Describe how to connect to the SmartPeak Server as a user.
Todo
Various optimisations.
Credit¶
This project could have not existed without the excellent tools available: OpenMS, Boost, ImGui, ImPlot, Plog, Qt, Eigen, Doxygen, Sphinx, and many others.
License¶
This project uses a MIT license, with the hope that it’ll be accessible to most users. If you require a different license, please raise an issue and I will consider a dual license.
The full license is available here.