Struct SequenceSegmentProcessor

• Defined in File SequenceSegmentProcessor.h

Inheritance Relationships

Base Type

• public SmartPeak::IProcessorDescription (Struct IProcessorDescription)

Derived Types

• public SmartPeak::CalculateCalibration (Struct CalculateCalibration)

• public SmartPeak::EstimateFeatureBackgroundInterferences (Struct EstimateFeatureBackgroundInterferences)

• public SmartPeak::EstimateFeatureFilterValues (Struct EstimateFeatureFilterValues)

• public SmartPeak::EstimateFeatureQCValues (Struct EstimateFeatureQCValues)

• public SmartPeak::EstimateFeatureRSDs (Struct EstimateFeatureRSDs)

• public SmartPeak::LoadFeatureBackgroundEstimations (Struct LoadFeatureBackgroundEstimations)

• public SmartPeak::LoadFeatureBackgroundFilters (Struct LoadFeatureBackgroundFilters)

• public SmartPeak::LoadFeatureBackgroundQCs (Struct LoadFeatureBackgroundQCs)

• public SmartPeak::LoadFeatureFilters (Struct LoadFeatureFilters)

• public SmartPeak::LoadFeatureQCs (Struct LoadFeatureQCs)

• public SmartPeak::LoadFeatureRSDEstimations (Struct LoadFeatureRSDEstimations)

• public SmartPeak::LoadFeatureRSDFilters (Struct LoadFeatureRSDFilters)

• public SmartPeak::LoadFeatureRSDQCs (Struct LoadFeatureRSDQCs)

• public SmartPeak::LoadQuantitationMethods (Struct LoadQuantitationMethods)

• public SmartPeak::LoadStandardsConcentrations (Struct LoadStandardsConcentrations)

• public SmartPeak::StoreFeatureBackgroundEstimations (Struct StoreFeatureBackgroundEstimations)

• public SmartPeak::StoreFeatureBackgroundFilters (Struct StoreFeatureBackgroundFilters)

• public SmartPeak::StoreFeatureBackgroundQCs (Struct StoreFeatureBackgroundQCs)

• public SmartPeak::StoreFeatureFilters (Struct StoreFeatureFilters)

• public SmartPeak::StoreFeatureQCs (Struct StoreFeatureQCs)

• public SmartPeak::StoreFeatureRSDEstimations (Struct StoreFeatureRSDEstimations)

• public SmartPeak::StoreFeatureRSDFilters (Struct StoreFeatureRSDFilters)

• public SmartPeak::StoreFeatureRSDQCs (Struct StoreFeatureRSDQCs)

• public SmartPeak::StoreQuantitationMethods (Struct StoreQuantitationMethods)

• public SmartPeak::TransferLOQToFeatureFilters (Struct TransferLOQToFeatureFilters)

• public SmartPeak::TransferLOQToFeatureQCs (Struct TransferLOQToFeatureQCs)

Struct Documentation

struct SmartPeak::SequenceSegmentProcessor : public SmartPeak::IProcessorDescription

Subclassed by SmartPeak::CalculateCalibration, SmartPeak::EstimateFeatureBackgroundInterferences, SmartPeak::EstimateFeatureFilterValues, SmartPeak::EstimateFeatureQCValues, SmartPeak::EstimateFeatureRSDs, SmartPeak::LoadFeatureBackgroundEstimations, SmartPeak::LoadFeatureBackgroundFilters, SmartPeak::LoadFeatureBackgroundQCs, SmartPeak::LoadFeatureFilters, SmartPeak::LoadFeatureQCs, SmartPeak::LoadFeatureRSDEstimations, SmartPeak::LoadFeatureRSDFilters, SmartPeak::LoadFeatureRSDQCs, SmartPeak::LoadQuantitationMethods, SmartPeak::LoadStandardsConcentrations, SmartPeak::StoreFeatureBackgroundEstimations, SmartPeak::StoreFeatureBackgroundFilters, SmartPeak::StoreFeatureBackgroundQCs, SmartPeak::StoreFeatureFilters, SmartPeak::StoreFeatureQCs, SmartPeak::StoreFeatureRSDEstimations, SmartPeak::StoreFeatureRSDFilters, SmartPeak::StoreFeatureRSDQCs, SmartPeak::StoreQuantitationMethods, SmartPeak::TransferLOQToFeatureFilters, SmartPeak::TransferLOQToFeatureQCs

Public Functions

SequenceSegmentProcessor(const SequenceSegmentProcessor &other) = delete

SequenceSegmentProcessor &operator=(const SequenceSegmentProcessor &other) = delete

virtual ~SequenceSegmentProcessor() = default

virtual void process(SequenceSegmentHandler &sequenceSegmentHandler_IO, const SequenceHandler &sequenceHandler_I, const ParameterSet &params_I, const Filenames &filenames) const = 0

Interface to all sequence segment processing methods.

Parameters

• sequenceSegmentHandler_IO – [inout] Sequence segment handler

• sequenceHandler_I – [in] Sequence handler

• params_I – [in] Dictionary of parameter names, values, descriptions, and tags

• filenames – [in] Info about where data should be read from or written to

Public Static Functions

static void getSampleIndicesBySampleType(const SequenceSegmentHandler &sequenceSegmentHandler, const SequenceHandler &sequenceHandler, const SampleType sampleType, std::vector<size_t> &sampleIndices)

Return all injection indices that belong to a given sample type.

Parameters

• sequenceSegmentHandler – [in] Sequence segment handler

• sequenceHandler – [in] Sequence handler

• sampleType – [in] Sample type filter

• sampleIndices – [out] Output sample indices

Protected Functions

SequenceSegmentProcessor() = default