Struct RawDataProcessor

• Defined in File RawDataProcessor.h

Inheritance Relationships

Base Type

• public SmartPeak::IProcessorDescription (Struct IProcessorDescription)

Derived Types

• public SmartPeak::CalculateIsotopicPurities (Struct CalculateIsotopicPurities)

• public SmartPeak::CalculateMDVAccuracies (Struct CalculateMDVAccuracies)

• public SmartPeak::CalculateMDVs (Struct CalculateMDVs)

• public SmartPeak::CheckFeatures (Struct CheckFeatures)

• public SmartPeak::CheckFeaturesBackgroundInterferences (Struct CheckFeaturesBackgroundInterferences)

• public SmartPeak::CheckFeaturesRSDs (Struct CheckFeaturesRSDs)

• public SmartPeak::ClearData (Struct ClearData)

• public SmartPeak::ExtractChromatogramWindows (Struct ExtractChromatogramWindows)

• public SmartPeak::ExtractSpectraWindows (Struct ExtractSpectraWindows)

• public SmartPeak::FilterFeatures (Struct FilterFeatures)

• public SmartPeak::FilterFeaturesBackgroundInterferences (Struct FilterFeaturesBackgroundInterferences)

• public SmartPeak::FilterFeaturesRSDs (Struct FilterFeaturesRSDs)

• public SmartPeak::FitFeaturesEMG (Struct FitFeaturesEMG)

• public SmartPeak::IsotopicCorrections (Struct IsotopicCorrections)

• public SmartPeak::LoadAnnotations (Struct LoadAnnotations)

• public SmartPeak::LoadFeatureFiltersRDP (Struct LoadFeatureFiltersRDP)

• public SmartPeak::LoadFeatureQCsRDP (Struct LoadFeatureQCsRDP)

• public SmartPeak::LoadFeatures (Struct LoadFeatures)

• public SmartPeak::LoadParameters (Struct LoadParameters)

• public SmartPeak::LoadRawData (Struct LoadRawData)

• public SmartPeak::LoadTransitions (Struct LoadTransitions)

• public SmartPeak::LoadValidationData (Struct LoadValidationData)

• public SmartPeak::MapChromatograms (Struct MapChromatograms)

• public SmartPeak::MergeFeatures (Struct MergeFeatures)

• public SmartPeak::MergeSpectra (Struct MergeSpectra)

• public SmartPeak::PickMRMFeatures (Struct PickMRMFeatures)

• public SmartPeak::PickMS1Features (Struct PickMS1Features)

• public SmartPeak::PickMS2Features (Struct PickMS2Features)

• public SmartPeak::PlotFeatures (Struct PlotFeatures)

• public SmartPeak::QuantifyFeatures (Struct QuantifyFeatures)

• public SmartPeak::SearchAccurateMass (Struct SearchAccurateMass)

• public SmartPeak::SelectFeatures (Struct SelectFeatures)

• public SmartPeak::StoreAnnotations (Struct StoreAnnotations)

• public SmartPeak::StoreFeatureFiltersRDP (Struct StoreFeatureFiltersRDP)

• public SmartPeak::StoreFeatureQCsRDP (Struct StoreFeatureQCsRDP)

• public SmartPeak::StoreFeatures (Struct StoreFeatures)

• public SmartPeak::StoreRawData (Struct StoreRawData)

• public SmartPeak::ValidateFeatures (Struct ValidateFeatures)

• public SmartPeak::ZeroChromatogramBaseline (Struct ZeroChromatogramBaseline)

Struct Documentation

struct SmartPeak::RawDataProcessor : public SmartPeak::IProcessorDescription

Subclassed by SmartPeak::CalculateIsotopicPurities, SmartPeak::CalculateMDVAccuracies, SmartPeak::CalculateMDVs, SmartPeak::CheckFeatures, SmartPeak::CheckFeaturesBackgroundInterferences, SmartPeak::CheckFeaturesRSDs, SmartPeak::ClearData, SmartPeak::ExtractChromatogramWindows, SmartPeak::ExtractSpectraWindows, SmartPeak::FilterFeatures, SmartPeak::FilterFeaturesBackgroundInterferences, SmartPeak::FilterFeaturesRSDs, SmartPeak::FitFeaturesEMG, SmartPeak::IsotopicCorrections, SmartPeak::LoadAnnotations, SmartPeak::LoadFeatureFiltersRDP, SmartPeak::LoadFeatureQCsRDP, SmartPeak::LoadFeatures, SmartPeak::LoadParameters, SmartPeak::LoadRawData, SmartPeak::LoadTransitions, SmartPeak::LoadValidationData, SmartPeak::MapChromatograms, SmartPeak::MergeFeatures, SmartPeak::MergeSpectra, SmartPeak::PickMRMFeatures, SmartPeak::PickMS1Features, SmartPeak::PickMS2Features, SmartPeak::PlotFeatures, SmartPeak::QuantifyFeatures, SmartPeak::SearchAccurateMass, SmartPeak::SelectFeatures, SmartPeak::StoreAnnotations, SmartPeak::StoreFeatureFiltersRDP, SmartPeak::StoreFeatureQCsRDP, SmartPeak::StoreFeatures, SmartPeak::StoreRawData, SmartPeak::ValidateFeatures, SmartPeak::ZeroChromatogramBaseline

Public Functions

RawDataProcessor(const RawDataProcessor &other) = delete

RawDataProcessor &operator=(const RawDataProcessor &other) = delete

virtual ~RawDataProcessor() = default

inline virtual ParameterSet getParameterSchema() const override

Get the Schema (possible, default parameters) of the processor.

virtual void process(RawDataHandler &rawDataHandler_IO, const ParameterSet &params_I, const Filenames &filenames) const = 0

Interface to all raw data processing methods.

Parameters

• rawDataHandler_IO – [inout] Raw data file struct

• params_I – [in] Dictionary of parameter names, values, descriptions, and tags

• filenames – [in] Info about where data should be read from or written to

Protected Functions

RawDataProcessor() = default