Class SessionHandler¶

Defined in File SessionHandler.h

Nested Relationships¶

Nested Types¶

Struct SessionHandler::ScatterPlotData

Class Documentation¶

class SmartPeak::SessionHandler¶

Public Functions

void setMinimalDataAndFilters(const SequenceHandler &sequence_handler)¶

void setInjectionExplorer()¶: set the InjectionExplorer-specific data

void setTransitionExplorer()¶: set the TransitionExplorer-specific data

void setFeatureExplorer()¶: set the FeatureExplorer-specific data

void setSpectrumExplorer()¶: set the SpectrumExplorer-specific data

void setSequenceTable(const SequenceHandler &sequence_handler)¶: set the SequenceTable-specific data

void setTransitionsTable(const SequenceHandler &sequence_handler)¶: set the TransitionsTable-specific data

void setSpectrumTable(const SequenceHandler &sequence_handler)¶: set the SpectrumTable-specific data

void setWorkflowTable(const std::vector<ApplicationHandler::Command> &commands)¶: set the WorkflowTable-specific data

void getParametersTable(ParameterSet user_parameters, const std::vector<ApplicationHandler::Command> &commands, Eigen::Tensor<std::string, 1> &headers_, Eigen::Tensor<std::string, 2> &body_)¶

void setQuantMethodTable(const SequenceHandler &sequence_handler)¶: set the QuantMethodTable-specific data

void setStdsConcsTable(const SequenceHandler &sequence_handler)¶: set the StdsConcsTable-specific data

void setComponentFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentFiltersTable-specific data

void setComponentGroupFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupFiltersTable-specific data

void setComponentQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentQCsTable-specific data

void setComponentGroupQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupQCsTable-specific data

void setComponentRSDFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentFiltersTable-specific data

void setComponentGroupRSDFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupFiltersTable-specific data

void setComponentRSDQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentQCsTable-specific data

void setComponentGroupRSDQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupQCsTable-specific data

void setComponentBackgroundFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentFiltersTable-specific data

void setComponentGroupBackgroundFiltersTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupFiltersTable-specific data

void setComponentBackgroundQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentQCsTable-specific data

void setComponentGroupBackgroundQCsTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupQCsTable-specific data

void setComponentRSDEstimationsTable(const SequenceHandler &sequence_handler)¶: set the ComponentEstimationsTable-specific data

void setComponentGroupRSDEstimationsTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupEstimationsTable-specific data

void setComponentBackgroundEstimationsTable(const SequenceHandler &sequence_handler)¶: set the ComponentEstimationsTable-specific data

void setComponentGroupBackgroundEstimationsTable(const SequenceHandler &sequence_handler)¶: set the ComponentGroupEstimationsTable-specific data

bool setFeatureTable(const SequenceHandler &sequence_handler)¶

void setFeatureMatrix(const SequenceHandler &sequence_handler)¶

bool getChromatogramScatterPlot(const SequenceHandler &sequence_handler, ScatterPlotData &result, const std::pair<float, float> &range, const std::set<std::string> &sample_names, const std::set<std::string> &component_names)¶

bool getSpectrumScatterPlot(const SequenceHandler &sequence_handler, ScatterPlotData &result, const std::pair<float, float> &range, const std::set<std::string> &sample_names, const std::set<std::string> &scan_names, const std::set<std::string> &component_group_names)¶

void setFeatureLinePlot()¶

void setFeatureHeatMap()¶

bool setCalibratorsScatterLinePlot(const SequenceHandler &sequence_handler)¶

Eigen::Tensor<std::string, 1> getInjectionExplorerHeader()¶

Eigen::Tensor<std::string, 2> getInjectionExplorerBody()¶

Eigen::Tensor<std::string, 1> getTransitionExplorerHeader()¶

Eigen::Tensor<std::string, 2> getTransitionExplorerBody()¶

Eigen::Tensor<std::string, 1> getSpectrumExplorerHeader()¶

Eigen::Tensor<std::string, 2> getSpectrumExplorerBody()¶

Eigen::Tensor<bool, 1> getSequenceTableFilters()¶

Eigen::Tensor<bool, 1> getTransitionsTableFilters()¶

Eigen::Tensor<bool, 1> getSpectrumTableFilters()¶

Eigen::Tensor<bool, 1> getQuantMethodsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentRSDFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentRSDQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupRSDFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupRSDQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentBackgroundFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentBackgroundQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupBackgroundFiltersTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupBackgroundQCsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentRSDEstimationsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupRSDEstimationsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentBackgroundEstimationsTableFilters()¶

Eigen::Tensor<bool, 1> getComponentGroupBackgroundEstimationsTableFilters()¶

std::set<std::string> getSelectInjectionNamesWorkflow(const SequenceHandler &sequence_handler)¶

std::set<std::string> getSelectSequenceSegmentNamesWorkflow(const SequenceHandler &sequence_handler)¶

std::set<std::string> getSelectSampleGroupNamesWorkflow(const SequenceHandler &sequence_handler)¶

Eigen::Tensor<std::string, 1> getSelectSampleNamesTable()¶

Eigen::Tensor<std::string, 1> getSelectSampleNamesPlot()¶

Eigen::Tensor<std::string, 1> getSelectTransitionsTable()¶

Eigen::Tensor<std::string, 1> getSelectTransitionGroupsTable()¶

Eigen::Tensor<std::string, 1> getSelectTransitionsPlot()¶

Eigen::Tensor<std::string, 1> getSelectTransitionGroupsPlot()¶

Eigen::Tensor<std::string, 1> getSelectFeatureMetaValuesTable()¶

Eigen::Tensor<std::string, 1> getSelectFeatureMetaValuesPlot()¶

Eigen::Tensor<std::string, 1> getSelectSpectrumPlot()¶

int getNSelectedSampleNamesTable()¶

int getNSelectedSampleNamesPlot()¶

int getNSelectedTransitionsTable()¶

int getNSelectedTransitionsPlot()¶

int getNSelectedFeatureMetaValuesTable()¶

int getNSelectedFeatureMetaValuesPlot()¶

Public Members

Eigen::Tensor<std::string, 1> injection_explorer_checkbox_headers¶

Eigen::Tensor<bool, 2> injection_explorer_checkbox_body¶

Eigen::Tensor<bool, 1> injection_explorer_checked_rows¶

Eigen::Tensor<std::string, 1> transition_explorer_checkbox_headers¶

Eigen::Tensor<bool, 2> transition_explorer_checkbox_body¶

Eigen::Tensor<bool, 1> transition_explorer_checked_rows¶

Eigen::Tensor<std::string, 1> spectrum_explorer_checkbox_headers¶

Eigen::Tensor<bool, 2> spectrum_explorer_checkbox_body¶

Eigen::Tensor<bool, 1> spectrum_explorer_checked_rows¶

Eigen::Tensor<std::string, 1> feature_explorer_headers¶

Eigen::Tensor<std::string, 1> feature_explorer_checkbox_headers¶

Eigen::Tensor<std::string, 2> feature_explorer_body¶

Eigen::Tensor<bool, 2> feature_explorer_checkbox_body¶

Eigen::Tensor<bool, 1> feature_explorer_checked_rows¶

Eigen::Tensor<std::string, 1> sequence_table_headers¶

Eigen::Tensor<std::string, 2> sequence_table_body¶

Eigen::Tensor<std::string, 1> transitions_table_headers¶

Eigen::Tensor<std::string, 2> transitions_table_body¶

Eigen::Tensor<std::string, 1> spectrum_table_headers¶

Eigen::Tensor<std::string, 2> spectrum_table_body¶

Eigen::Tensor<std::string, 1> workflow_table_headers¶

Eigen::Tensor<std::string, 2> workflow_table_body¶

Eigen::Tensor<std::string, 1> quant_method_table_headers¶

Eigen::Tensor<std::string, 2> quant_method_table_body¶

Eigen::Tensor<std::string, 1> stds_concs_table_headers¶

Eigen::Tensor<std::string, 2> stds_concs_table_body¶

Eigen::Tensor<std::string, 1> comp_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_group_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_group_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_rsd_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_rsd_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_group_rsd_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_rsd_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_rsd_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_rsd_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_group_rsd_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_rsd_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_background_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_background_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_group_background_filters_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_background_filters_table_body¶

Eigen::Tensor<std::string, 1> comp_background_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_background_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_group_background_qcs_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_background_qcs_table_body¶

Eigen::Tensor<std::string, 1> comp_rsd_estimations_table_headers¶

Eigen::Tensor<std::string, 2> comp_rsd_estimations_table_body¶

Eigen::Tensor<std::string, 1> comp_group_rsd_estimations_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_rsd_estimations_table_body¶

Eigen::Tensor<std::string, 1> comp_background_estimations_table_headers¶

Eigen::Tensor<std::string, 2> comp_background_estimations_table_body¶

Eigen::Tensor<std::string, 1> comp_group_background_estimations_table_headers¶

Eigen::Tensor<std::string, 2> comp_group_background_estimations_table_body¶

Eigen::Tensor<std::string, 1> feature_table_headers¶

Eigen::Tensor<std::string, 2> feature_table_body¶

Eigen::Tensor<std::string, 1> feature_pivot_table_headers¶

Eigen::Tensor<std::string, 2> feature_pivot_table_rows¶

Eigen::Tensor<std::string, 2> feature_pivot_table_body¶

Eigen::Tensor<float, 2> feat_sample_data¶

Eigen::Tensor<float, 2> feat_value_data¶

Eigen::Tensor<std::string, 1> feat_line_series_names¶

std::string feat_line_x_axis_title¶

std::string feat_line_y_axis_title¶

float feat_line_sample_min¶

float feat_line_sample_max¶

float feat_value_min¶

float feat_value_max¶

Eigen::Tensor<float, 2, Eigen::RowMajor> feat_heatmap_data¶

Eigen::Tensor<std::string, 1> feat_heatmap_row_labels¶

Eigen::Tensor<std::string, 1> feat_heatmap_col_labels¶

std::string feat_heatmap_x_axis_title¶

std::string feat_heatmap_y_axis_title¶

std::vector<std::vector<float>> calibrators_conc_raw_data¶

std::vector<std::vector<float>> calibrators_feature_raw_data¶

std::vector<std::vector<float>> calibrators_conc_fit_data¶

std::vector<std::vector<float>> calibrators_feature_fit_data¶

std::vector<std::string> calibrators_series_names¶

std::string calibrators_x_axis_title¶

std::string calibrators_y_axis_title¶

float calibrators_conc_min¶

float calibrators_conc_max¶

float calibrators_feature_min¶

float calibrators_feature_max¶

struct ScatterPlotData¶

Public Members

std::vector<std::vector<float>> x_data_area_¶

std::vector<std::vector<float>> y_data_area_¶

std::vector<std::vector<float>> x_data_scatter_¶

std::vector<std::vector<float>> y_data_scatter_¶

std::vector<std::string> series_names_area_¶

std::vector<std::string> series_names_scatter_¶

std::string x_axis_title_¶

std::string y_axis_title_¶

float x_min_ = 0.0f¶

float x_max_ = 0.0f¶

float y_min_ = 0.0f¶

float y_max_ = 0.0f¶